UF Water Institute Research Projects

Publications

Thrust Areas	Ecosystem	Water Institute Classification Level

Coastal Zones Publications

Year	Publication Title	Author	Type
2015	Tropical tales of polar ice: evidence of Last Interglacial polar ice sheet retreat recorded by fossil reefs of the granitic Seychelles islands	Dutton, A., J. M. Webster, D. Zwartz, K. Lambeck, and B. Wohlfarth	Peer Reviewed
2014	A simplified approach for simulating changes in beach habitat due to the combine effects of long-term sea level rise, storm erosion, and nourishment. Env. Model. & Software 52:111-120. doi:10.1016/j.envsoft.2013.10.020	Chu-Agor, M.L., J.A. Guzman, R. Muñoz-Carpena, G.A. Kiker, I. Linkov.	Peer Reviewed
2014	Untangling drivers of species distribution predictions: Global Sensitivity and Uncertainty Analysis of MaxEnt. Env. Model. & Software 51:296-309. doi:10.1016/j.envsoft.2013.10.001	Convertino, M.,R. Muñoz-Carpena, M.L. Chu-Agor, G. Kiker and I. Linkov.	Peer Reviewed
2013	Biogeochemical Dynamics at Major River-Coastal Interfaces. Cambridge University Press	Allison, Thomas S. Bianchi Mead A., and Wei-Jun Cai.	Other Publications
2013	Brominated VSLSs in and over the East Pacific during the Halocarbon Air-Sea Transect –Pacific Cruise (HalocAST-P). J. Geophys. Res. (Oceans) DOI 10.1002/jgrc.20299.	Liu, Y., S.A. Yvon-Lewis, L. Hu, R.W. Smith, L. Shen, T.S. Bianchi, and L. Campbell.	Peer Reviewed
2013	Decision analysis for species preservation under sea-level rise. Ecological Modelling 263:264-272.	Linhoss, A.C., G.A. Kiker, M.E. Aiello-Lammens, M.L. Chu-Agor, M. Convertino, R. Muñoz-Carpena, R.Fischer and I. Linkov	Peer Reviewed
2013	Enhanced Transfer of Terrestrially-Derived Carbon to the Atmosphere in a Flooding Event. Geophys. Res. Lett. 40: 1–7 doi:10.1029/2012GL054145.	Bianchi, T.S., Fenix Garcia-Tigreros, Shari Yvon-Lewis, Michael > Shields, Heath J. Mills, David Butman, Christopher Osburn, Peter Raymond, Christopher Shank, Steven F. DiMarco, Nan Walker, Brandi Reese,Ruth Mullins, Antonietta Quigg, & George R. Aiken	Peer Reviewed
2013	Historical reconstruction of mangrove expansion in the Gulf of Mexico: linking climate change with carbon sequestration in coastal wetlands. Estuar. Coast. Shelf Sci. 119: 7-16.	Bianchi, T.S., M.A. Allison, J. Zhao, X. Li, R.S. Comeaux, R.A. Feagin, and R. Wasantha Kulawardhana	Peer Reviewed
2013	Historical reconstruction of organic carbon decay and preservation in the sediments on the East China Sea shelf. To: Journal of Geophysical Research (Biogeosciences):118, 1–15, doi:10.1002/jgrg.20079.	Li, X., T.S. Bianchi, M.A. Allison, P. Chapman, and G. Yang.	Peer Reviewed
2013	Modern organic carbon input from the Colville River to the sediments of Simpson's Lagoon, Beaufort Sea, Alaska. J. Geophys. Res. (Biogeoscience), 118, 1–17, doi:10.1002/jgrg.20065.	Schreiner, K.M., T.S. Bianchi, M.A. Allison, and T.I. Eglinton.	Peer Reviewed
2013	Spatial distribution of brominated very short-lived substances in the eastern Pacific. J. Geophys. Res. (Oceans), 118, doi:10.1002/jgrc.20183.	Liu, Y., S.A. Yvon-Lewis, D.C.O. Thornton, L. Campbell, and T.S. Bianchi.	Peer Reviewed
2013	The Coastal Ocean as a Key Dynamic Interface in the Global Carbon Cycle. Nature. (In press).	Bauer, J.E., W.J. Cai, P. Raymond, T.S. Bianchi, C.S. Hopkinson, and P. Regnier.	Peer Reviewed
2012	Dissolution in Bahamian blue holes, GSA Annual Meeting in Charlotte, NC, USA (4-7 November, 2012).	Martin, J.B., Ezell, J., Brown, A., Gulley, J., Spellman, P., Davis, R.L.	Other Publications
2012	Report: Understanding Future Sea Level Rise Impacts on Coastal Wetlands in the Apalachicola Bay Region of Florida's Gulf Coast. The Nature Conservancy. 60pp. 2012.	Freeman, K., Geselbracht, L., Gordon, D., Kelly, E. and L. Racevskis	Other Publications
2012	Presentation: Coastal Ecosystem Services and Sea Level Rise in Florida: Understanding Public Perceptions, Values, and Policy	Racevskis, L.	Other Publications
2012	A Spatial Analysis of Cultural Ecosystem Service Valuation by Regional Stakeholders in Florida - A Coastal Application of the Social Values for Ecosystem Services (SoIVES) Tool	Coffin, W., R.A. Swett, Z.D. Cole	Other Publications
2012	Ice Volume and Sea Level During the Last Interglacial	Dutton, A. and K. Lambeck	Peer Reviewed
2011	DISSOLUTION IN BAHAMIAN BLUE HOLES FROM TIDAL PUMPING. Karst Waters Institute Conference, Billings, MT (August 609, 2011).	Martin, J., Gulley, J., Spellman, P.	Other Publications
2011	Scale and resolution-invariance of suitable geographic range for shorebird metapopulations. Ecological Complexity 8(4):364-376	Convertino, M G.A. Kiker, R. Muñoz-Carpena, M.L. Chu-Agor, R.A. Fischer, I. Linkov.	Peer Reviewed
2011	Assessing hydrologic and biogeochemical controls on pore-water dissolved inorganic carbon cycling in a subterranean estuary: A 14C and 13C mass balance approach, Mar. Chem., doi 10.1016/j.marchem.2011.07.007	Dorsett, A., Cherrier, J., Martin, J.B., Cable, J.E.	Peer Reviewed
2011	Cold seeps in Monterey Bay, California: Geochemistry of pore waters and relationship to Benthic Foraminiferal Calcite, Applied Geochemistry, v. 26 (5) 738-746. 2011.	Gieskes, J., Rathburn, A.E., Martin, J.B., Pérez, M.E., Mahn, C., Bernhard, J.M., and Day, S.	Peer Reviewed
2011	Tides in a System of Connected Estuaries, J. Phys. Oceanogr., 41, 946-959, 2011	Waterhouse, A. F., Valle-Levinson, A. and C.D. Winant	Peer Reviewed
2011	Progress Report: Planning for Sea Level Rise: A Pilot Study to Evaluate and Improve the Development and Delivery of Habitat Vulnerability Assessments and Adaptive Conservation Designs to Coastal Decision Makers	Frank, K.	Other Publications
2010	Modeling water quality and hypoxia dynamics in Upper Charlotte Harbor, Florida, U.S.A. during 2000. Estuarine, Coastal and Shelf Science 90(4):250-263. 2010.	Kim, T., Sheng, P., Park, K.	Peer Reviewed
2010	Combined carbonate carbon isotopic and cellular ultrastructural studies of individual benthic foraminifera: II. Method description. Paleoceanography, 25(2). 2010.	Bernhard,J.M., J.B. Martin, A.E. Rathburn	Peer Reviewed
2010	Combined carbonate carbon isotopic and cellular ultrastructural studies of individual benthic foraminifera: II. Towards an understanding of apparent disequilibrium in hydrocarbon seeps, Paleoceanography, 25(4). 2010.	Bernhard, J.M., J.B. Martin, A.E. Rathburn	Peer Reviewed
2010	Safak, I., Sheremet, A., Valle-Levinson, A., Waterhouse, A.F. Variation of overtides by wave enhanced bottom drag in a North Florida tidal inlet. Cont. Shelf Res (30) 1963-1970.	Safak et al.	Peer Reviewed
2010	Transverse structure of subtidal flow in a weakly stratified subtropical inlet. Cont. Shelf. Res., 30, 281-292, 2010.	Waterhouse, A. and A. Valle-Levinson	Peer Reviewed
2010	Integrated Modeling for the Assessment of Ecological Impacts of Sea Level Rise. American Geophysical Union, Fall Meeting, 2010.	Hagen, S. C.; Lewis, G.; Bartel, R.; Batten, B.; Huang, W.; Morris, J.; Slinn, D. N.; Sparks, J.; Walters, L.; Wang, D.; Weishampel, J.; Yeh, G.	Other Publications
2009	Carbon and oxygen stable isotope geochemistry of live (stained) benthic foraminifera from the north pacific and the south Australian bight, Marine Micropaleontology, 70:89-101. 2009.	Basak, C., A. E.Rathburn, M. E. Pérez, J. B. Martin, J. W.Kluesner, L. A. Levin, P. De Deckker, M. Abriani	Peer Reviewed
2009	Water quality characteristics of the nearshore Gulf coast waters adjacent to Citrus, Hernando and Levy Counties. Project COAST 1997–2008	Jacoby,C.A., T.K. Frazer, D.D. Saindon	Final Report
2009	Forecasting Storm Surge, Inundation, and 3D Circulation along the Florida Coast. Estuarine and Coastal Modeling Conference 2009.	Sheng, P.Y., Paramygin, V.A.	Other Publications
2009	Subtidal flow and its variability at the entrance to a subtropical lagoon, Cont. Shelf Res., 29, 2318-2332, 2009	Murphy, P., Waterhouse, A., Penko, A. , Hesser, T. and A. Valle-Levinson	Peer Reviewed
2008	Episodic high intensity mixing events in a subterranean estuary: Effects of tropical cyclones. Limnol. Oceanogr., 53(2), 2008, 666–674.	Smith,C.G., J.E. Cable, J.B. Martin	Peer Reviewed
2008	Evaluating the source and seasonality of submarine groundwater discharge using a Radon-222 pore water transport model, EPSL, 273:312-322. 2008.	Smith, Christopher G., Cable, Jaye E., Martin, Jonathan B., Roy, Moutusi,	Peer Reviewed
2008	Report: Measuring the Effectiveness of Lagoon Quest: A Case Study in Environmental Education Program Evaluation	Chen-Hsuan, J., Martha C. Monroe, and Alison Gordon	Final Report
2008	Circulation and flushing in the lagoonal system of the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), Florida. Journal of Coastal Res 55:9-25. 2008.	Sheng, Y.P., Davis, J.R.	Peer Reviewed
2008	Residual exchange flow in subtropical estuaries, Estuaries and Coasts, 32:54–67, doi:10.1007/s12237-008-9112-1, 2009	Valle-Levinson, A., Gutierrez de Velasco, G., Trasviña, A., Souza, A.J., Durazo, R. and A. J. Mehta	Peer Reviewed
2008	Sediment Transport through Tidal Inlets During Extreme Forcing: Erosion or Accretion?, Final Report	Valle-Levinson, A. Et al	Final Report
2008	Spatial Structure of Tidal and Residual Flows at a Tidal Inlet. Amy Waterhouse, Arnoldo Valle-Levinson. Ocean Sciences meeting in Orlando in March of 2008	Valle-Levinson et al.	Other Publications
2007	Chemical composition and spatial distribution of mangrove-generated brines: Interactions with and influences on submarine ground water discharge. Marine Chemistry, 104: 58-68. 2007.	McGowan, K.T., and Martin, J.B.	Peer Reviewed
2007	Re-circulation of shallow lagoon water and its significance on chemical fluxes in the Banana River Lagoon, Florida, Journal of Coastal Research, 23: 878-891. 2007.	Bhadha, J., Martin, J.B., Jaeger, J., Lindenberg, M., Cable, J.	Peer Reviewed
2007	Magnitudes of submarine groundwater discharge from marine and terrestrial sources: Indian River Lagoon, Florida. Water Resources Research 43, W05440, doi:10.1029/2006WR005266. 2007.	Martin, J., J. Cable, C. Smith, M. Roy, and J. Cherrier	Peer Reviewed
2006	Report: . Hydrodynamic Modeling of Charlotte Harbor in Support of the Determination of Minimum Flows for the Lower Peace and Myakka Rivers. Report prepared by the Civil & Coastal Engineering Department, University of Florida, for the Southwest Florida Water Management District. 2006	Sheng, Y.P., T. Kim, J. Davis, and S. Schofield	Final Report
2006	A review of submarine ground water discharge: biogeochemical inputs and leaky coastlines, p. 22-41. in I.S. Zekster, R.G. Dzhamalov, and L.G. Everett, eds. Submarine Groundwater. CRC Press, ISBN: 0849335760. 512 Pp. 2006.	Cable, J., J. Martin, and M. Taniguchi.	Peer Reviewed
2006	Exonerating Bernouilli? Evaluating physical and biological processes affecting marine seepage meter measurements. Limnology and Oceanography: Methods 4:172-183. 2006.	Cable, J. J. Martin, and J. Jaeger.	Peer Reviewed
2006	Thermal and chemical evidence for rapid water exchange across the sediment-water interface by bioirrigation in the Indian River Lagoon, Florida, Limnology and Oceanography, 51: 1332-1341. 2006.	Martin, J.B., J.E. Cable, J. Jaeger, K. Hartl, C.G. Smith	Peer Reviewed
2006	Final Report 1997-2005: Water quality characteristics of the nearshore Gulf coast waters adjacent to Citrus, Hernando and Levy counties	Frazer, T.K., S.K. Notestein, S.R. Keller, C.A. Jacoby	Final Report
2005	Surface and Pore Water Mixing in Estuarine Sediments: Implications for Nutrient and Si Cycling.	Jehangir H. Bhadha, Jonathan B. Martin, John Jaeger Mary Lindenberg, and Jaye E. Cable	Peer Reviewed
2004	Dissertation (UF): MODELING THE CIRCULATION AND WATER QUALITY N CHARLOTTE HARBOR ESTUARINE SYSTEM, FLORIDA	Park, K.	Other Publications
2004	Integrated-Process and Integrated-Scale Modeling of Large Coastal and Estuarine Areas. In: Proceedings of the 8th International Conference on Estuarine and Coastal Modeling (ASCE, St. Petersburg, Florida), pp. 407–422. 2004	Sheng, Y. P., J. R. Davis, V. Paramygin, K. Park, T. Kim, and V. Alymov	Other Publications
2004	An inexpensive, automatic, submersible water sampler. Limnology and Oceanog: Methods 2: 398-405.	Martin, J.B., Thomas, R.C., and K.M. Hartl	Peer Reviewed
2003	Thesis: CHEMICAL TRACING AND ANALYTICAL AND MASS-BALANCE MODES OF PORE WATER CIRCULATION IN THE BANANA RIVER LAGOON, FLORIDA. 2003.	Bhada, Jehangir H.	Other Publications
2002	Annual Report 2001: Water Quality Characteristics of the Nearshore Gulf Coast Waters Adjacent to Pasco County	Frazer, T.K. , S.K. Notestein, J.A. Hale, M.V. Hoyer, D.E. Canfield	Other Publications
2001	Indian River Lagoon Hydrodynamics and Water Quality Model: Nutrient Storage and Transformations in Sediments	Reddy, K.R., M.M. Fisher, H.K. Pant, P. Inglett, J.R. White	Final Report
2001	Nutrient Limiting Status of Phytoplankton in Five Gulf Coast Rivers and Their Associated Estuaries	Frazer, T.K. , E.J. Phlips, S.K. Notestein, C.Jett	Other Publications
2000	Annual Report 2000: Project COAST	Frazer. T.K.	Other Publications
2000	Final Report 2000: Water Quality Characteristics of the Nearshore Gulf Coast Waters Adjacent to Citrus, Hernando and Levy Counties	Frazer, T.K., S.K. Notestein, J.A. Hale, D.E. Canfield, S.B. Blitch	Final Report
1999	ANNUAL PROJECT SUMMARY: NUTRIENT ASSIMILATION CAPACITY OF FIVE GULF COAST RIVERS	Frazer,T.K.	Other Publications
1998	Circulation in the Charlotte Harbor Estuarine System. Proceedings of the Charlotte Harbor Public Conference. 1998.	Sheng, Y. Peter	Other Publications


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