UF Water Institute Research Projects

Publications

Thrust Areas	Ecosystem	Water Institute Classification Level

Springs Publications

Year	Publication Title	Author	Type
2017	Nitrate reduction mechanisms and rates in an unconfined eogenetic karst aquifer at two sites with different redox potential, Journal of Geophysical Research- Biogeosciences, doi:10.1002/2016JG003463	Henson, W. R., G. Huang, W.D. Graham, and A. Ogram	Peer Reviewed
2015	Hydraulic effects on nitrogen removal in a tidal spring‐fed river, Water Resources Research 51 (3), 1443-1456, 2015.	Hensley, R.T, M.J. Cohen, L.V. Korhnak	Peer Reviewed
2015	Spatiotemporal variations in carbon dynamics during a low flow period in a carbonate karst watershed: Santa Fe River, Florida, USA. Biogeochemistry, Vol. 122, Issue 1, pgs. 131-150, 2015.	Jin, J., A. R. Zimmerman, J. B. Martin, M. B. Khadka	Peer Reviewed
2015	Heterogeneous distributions of CO2 may be more important for dissolution and karstification in coastal eogenetic limestone than mixing dissolution, Earth Surface Processes and Landforms.	Gulley, J., J. B. Martin, P. J. Moore, A. Brown, P. D. Spellman, J. Ezell	Peer Reviewed
2014	Environmentally-mediated consumer control of algal proliferation in Florida springs	Dina M. Liebowitz,Matthew J. Cohen, James B. Heffernan, Lawrence V. Korhnak and Thomas K. Frazer	Peer Reviewed
2014	Inferring nitrogen removal in large rivers from high-resolution longitudinal profiling	Robert T. Hensley, Matthew J. Cohen, and Larry V. Korhnak	Peer Reviewed
2014	Nutrient flux, uptake, and autotrophic limitation in streams and rivers, Freshwater Science 33 (1), 85-98, 2014.	King, S. A., J.B. Heffernan, M.J. Cohen	Peer Reviewed
2014	Environmentally-mediated consumer control of algal proliferation in Florida springs	Dina M. Liebowitz,Matthew J. Cohen, James B. Heffernan, Lawrence V. Korhnak and Thomas K. Frazer	Peer Reviewed
2014	Organic and inorganic carbon dynamics in a karst aquifer: Santa Fe River Sink-Rise system, north Florida, USA. Journal of Geophysical Research: Biogeosciences. 2014. Vol 119, Issue 3 340-357. doi:10.1002/2013JG002350.	Jin, J., A. R. Zimmerman, P. J. Moore and J. B. Martin	Peer Reviewed
2014	Transport of dissolved carbon and CO2 degassing from a river system in a mixed silicate and carbonate catchment. Journal of Hydrology. 2014. 513: 391-402	Khadka, M. B., J. B. Martin, J. Jin	Peer Reviewed
2014	Characterization of groundwater and surface water mixing in a semi-confined karst aquifer using time lapse electrical resistivity tomography. Water Resources Research, DOI: 10.1002/2013WR013991,in press, 2014.	Meyerhoff, S, R. Maxwell, A. Revil, J. Martin, M. Karaoulis, and W. Graham,	Peer Reviewed
2014	Insights on geologic and vegetative controls over hydrologic behavior of a large complex basin – Global Sensitivity Analysis of an integrated parallel hydrologic model	Srivastava, V., W. Graham, R. Munoz-Carpena, and R. Maxwell	Peer Reviewed
2014	Inﬂuence of partial conﬁnement and Holocene river formation on groundwater ﬂow and dissolution in the Florida carbonate platform. Hydrological Processes, Vol. 28, Issue 3, pgs. 705-717.	Gulley, J. D., J. B. Martin, P. Spellman, P. J. Moore, E. J. Screaton	Peer Reviewed
2014	Insights on surface water-groundwater exchange in the upper Floridan aquifer, north-central Florida (USA) from streamflow data and numerical modeling. Hydrogeology Journal. 2014. 1-13.	Sutton, J., E. J. Screaton, and J. B. Martin	Peer Reviewed
2013	Catchability model selection for estimating the composition of fishes and invertebrates within dynamic aquatic ecosystems. NRC Research Press. Can. J. Fish. Aquat. Sci. 70:1-12. dx.doi.org/10.1139/cjfas-2012-0319	Lauretta, M.V., E.V. Camp, W.E. Pine, T.K. Frazer	Peer Reviewed
2013	Controls on diel metal cycles in a biologically productive carbonate-dominated river	Marie J. Kurz, Véronique de Montety, Jonathan B. Martin, Matthew J. Cohen, Chad R. Foster	Peer Reviewed
2013	Diel Phosphorus Variation and the Stoichiometry of Ecosystem Metabolism in a Large Spring-Fed River.	Cohen, M.J., Marie J. Kurz, James B. Heffernan, Jonathan B. Martin, Rachel L. Douglass, Chad R. Foster, and Ray G. Thomas	Peer Reviewed
2013	From rainfall to spring discharge: Coupling conduit flow, subsurface matrix flow and surface flow in karst systems with a discrete-continuum model, Advances in Water Resources,Volume 61, Pages 29-41, 2013.	de Rooij, R., P. Perrochet, and W. Graham	Peer Reviewed
2013	Dissolution in a variable confined carbonate platform: effects of allogenic runoff, hydraulic damming of groundwater inputs, and surface-groundwater exchange at the basin scale. Earth Surface Processes and Landforms, Vol. 38, Issue 14, pgs. 1700-1713. 2013	Gulley, J. D., J. B. Martin, P. Spellman, P. J. Moore, E. J. Screaton	Peer Reviewed
2013	Formation of phreatic caves in an eogenetic karst aquifer by CO2 enrichment at lower water tables and subsequent flooding by sea level rise. Earth Surface Processes and Landforms, Vol. 38, Issue 11, pgs. 1210-1224, 2013.	Gulley, J. D., J. B. Martin, P. J. Moore, J. Murphy	Peer Reviewed
2013	Experimental evidence for grazer control of filamentous algae in a spring-fed river. In Prep. 2013.	Liebowitz, D., M.J. Cohen, T.K. Frazer, J. Heffernan	Working Paper
2013	Monroe, M. C., R. Plate, and A. Oxarart. 2013. Intermediate collaborative adaptive management strategies build stakeholder capacity. Ecology and Society 18(2): 24.	Monroe, M. C., R. Plate, and A. Oxarart.	Peer Reviewed
2012	Interactions of diffuse and focused allogenic recharge in an eogenetic karst aquifer, Hydrogeology Journal, v. 20, p. 767-781. 2012.	Langston, A.L., Screaton, E.J., Martin, J.B., Bailly-Comte, V.	Peer Reviewed
2012	Identification of nitrogen sources and transformations within karst springs using isotope tracers of nitrogen. Biochemistry (2012) 108:219-232.	Albertin, A., Sickman, J.O., Pinowska, A., R.J. Stevenson.	Peer Reviewed
2012	Inference of riverine nitrogen processing from longitudinal and diel variation in dual nitrate isotopes. Journal of Geophys Res 117 (2012): G01021. doi:10.1029/2011JG001715	Cohen, M.J., J.B. Heffernan, A.Albertin, J.B. Martin	Peer Reviewed
2012	Changes in submersed aquatic vegetation affect predation risk of a common prey fish Lucania parva (Cyprinodontiformes: Fundulidae) in a spring-fed coastal river. Fisheries Management and Ecology, 2012, 19:245-251.	Camp, E. V., D. C. Gwinn, W. E. Pine, III, and T. K. Frazer	Peer Reviewed
2012	Denitrification and inference of nitrogen sources in the karstic Floridan Aquifer. Biogeosciences 9, 1671-1690. doi:10.5194/bg-9-1671-2012	Heffernan, J. B., A. Albertin, M. Fork, B. Katz, and M.J. Cohen	Peer Reviewed
2012	A particle-tracking scheme for simulating pathlines in coupled surface-subsurface flows, Advances in Water Resources, Volume 52, Pages 7–18, 2013.	de Rooij, R., Graham, W., Maxwell, R.M.	Peer Reviewed
2012	Effects of Antecedent Hydrogeologic Conditions on Flood Magnitude and Recharge to the Floridan Aquifer in North-Central Florida	Ball, C. and J.B. Martin	Peer Reviewed
2012	Visualization of conduit-matrix conductivity differences in a karst aquifer using time-lapse electrical resistivity, GEOPHYSICAL RESEARCH LETTERS, VOL. 39, L24401, doi:10.1029/2012GL053933, 2012	Meyerhoff, Steven B., Marios Karaoulis, Florian Fiebig, Reed M. Maxwell, Andre Revil, Jonathan B. Martin, and Wendy D. Graham	Peer Reviewed
2011	Time variant cross-correlation to assess residence time of water, implication for hydraulics of a sink/rise karst system, Water Resources Research, v. 47 W05547, doi: 10.1029/2010WR009613. 2011.	Bailly-Comte, V., Martin, J.B. and Screaton, E.J.	Peer Reviewed
2011	Final Report: Increased Nutrient Loading of Spring-Fed Coastal Rivers: Effects on Habitat and Faunal Communities	Frazer, T.K., M.V. Lauretta, W.E. Pine, E.J. Nagid, W. Strong, T. Tuten, G. Warren	Final Report
2011	Phd Dissertation: Habitat mediated community structure within spring-fed, coastal rivers.	Lauretta. M.V.	Other Publications
2011	Masters Thesis: Direct and indirect effects of terrestrial organic matter on river denitrification. 2011. Florida International University	Fork. M.L.	Other Publications
2011	Influence of diel biogeochemical cycles on carbonate equilibrium in a karst river. Chemical Geology	De Montety, V., J.B. Martin, M.J. Cohen, M.J. Kurz and C.R. Foster	Peer Reviewed
2011	River reversals in karst springs: a model for cave enlargement in eogenetic karst aquifers. Geologic Society of America Bulletin. 123(3-4): 457-467.	Gulley, J., Martin, J., Screaton, E., Moore, P.	Peer Reviewed
2011	Report: Ichetucknee Springs and River Restoration Plan (Draft). 2011.	Normandeau Associates, Inc.	Other Publications
2011	Report: Restoration Plan for the Rainbow Springs and River (Draft). 2011.	Normandeau Associates, Inc.	Other Publications
2011	Report: Restoration Plan for the Silver Springs and River (Draft). 2011.	Normandeau Associates, Inc.	Other Publications
2010	Conduit enlargement in an eogenetic karst aquifer, J. Hydrology, 393: 143-155. 2010.	Moore, P.J., Martin, J.B., Screaton, E.J., and Neuhoff, P.S.	Peer Reviewed
2010	Water exchange and pressure transfer between conduits and matrix and their influence on hydrodynamics of two karst aquifers with sinking streams, Journal of Hydrology 386 55-66, doi: 10.1016/j.jhydrol.2010.03.005, 2010.	Bailly-Comte, V., Martin, J. B., Jourde, H., Screaton, E. J., Pistre, S. and A. Langston	Peer Reviewed
2010	A Scalable Approach to Fusing Spatiotemporal Data to Estimate Streamflow via a Bayesian Network	Nagarajan, K.; Krekeler, C.; Slatton, K.C.; Graham, W.D.	Peer Reviewed
2010	Direct and indirect coupling of primary production and diel nitrate dynamics in a subtropical spring-fed river	James B. Heffernana,b and Matthew J. Cohen	Peer Reviewed
2010	Hydrologic and biotic influences on nitrate removal in a subtropical spring-fed river. Limnol. Oceonogr. 55(1), 2010, 249-263.	Heffernan, J.B., M.J. Cohen, T.K. Frazer, R.G. Thomas, T.J. Rayfield, J. Gulley, J.B. Martin, J.J. Delfino, W.D. Graham	Peer Reviewed
2010	Direct and indirect coupling of primary production and diel nitrate dynamics in a subtropical spring-fed river. Limnol. Oceanogr. 55(2), 2010, 677-688.	Heffernan, J.B. and M.J. Cohen	Peer Reviewed
2010	Algal blooms and the nitrogen-enrichment hypothesis in Florida springs: evidence, alternatives, and adaptive management, Ecological Applications, 20(3), 2010, pp. 816-829	Heffernan, J. B., Liebowitz, D. M., Frazer, T. K., Evans, J. M. and M. J. Cohen	Peer Reviewed
2010	A Scalable Approach to Fusing Spatio-Temporal Data to Estimate Streamflow via a Bayesian Network, IEEE Transactions on Geoscience and Remote Sensing, Vol PP, Issue 99, doi:10.1109/TGRS.2010.2049115, 2010.	Nagarajan K., C. Krekeler, K. C. Slatton, and W. D. Graham	Peer Reviewed
2010	Presentation: Characteristics and effects of flow reversals at Madison Blue and Peacock Springs (FL) during river flooding	Martin, J.B., J. Gulley, E.J. Screaton	Other Publications
2010	Report to the UF Water Institute: Study on Springs Basin Working Groups	Plate, R., Monroe, M. and A. Oxarart	Working Paper
2009	Conduit enlargement in eogenetic karst aquifers: An example from the Santa Fe River sink-rise system, north-central Florida, Geological Society of America Abstracts with programs, 41: 346. 2009.	Moore, P.J., Martin, J.B., Screaton, E., Neuhoff, P.S.	Other Publications
2009	Geochemical and statistical evidence of recharge, mixing, and controls on spring discharge in an eogenetic karst aquifer, J. Hydrol. 376(3-4):433-455. 2009.	Moore, P.J., Martin, J.B., and Screaton, E.J.	Peer Reviewed
2009	Characterization of Conduit-Matrix Interactions at the Santa Fe River, Sink/Rise System, Florida, NGWA Paper	Screaton, E. and J. B. Martin	Working Paper
2009	Geochemical and statistical evidence of recharge, mixing, and controls on spring discharge in an eogenetic karst aquifer, Journal of Hydrology 376 , 443-455	Moore, P. J., Martin, J. B., and E. J. Screaton	Peer Reviewed
2009	Relative importance and chemical effects of diffuse and focused recharge in an eogenetic karst aquifer: an example from the unconfined upper Floridan aquifer, USA, Hydrogeology Journal, DOI 10.1007/s10040-009-0460-0, 2009.	Ritorto, M. , Screaton, E. J., Martin, J. B. and P. J. Moore	Peer Reviewed
2009	PhD Dissertation: NUTRIENT DYNAMICS IN FLORIDA SPRINGS AND RELATIONSHIPS TO ALGAL BLOOMS	Albertin. A.R.	Other Publications
2009	Annual Report Year 1: Mechanisms of Nitrogen Loss in Florida’s Spring Fed Rivers	Cohen MJ, Liebowitz D, Heffernan JB, Korhnak L, Hensley R	Other Publications
2008	Evaluating Effectiveness of Best Management Practices for Animal Waste and Fertilizer Management to Reduce Nutrient Inputs into Ground Water in the Suwannee River Basin	Graetz, D.A.	Final Report
2008	Hydrochemical variations in an eogenetic karst aquifer: Influences of recharge, flow paths, and mixing to a first magnitude spring, 2008 Joint Meeting of Geological Society of America, Houston, Texas, 5-9 October 2008.	Moore, P.J., Martin, J.B., and Screaton, E.J.	Other Publications
2008	A Method for Measuring the Incremental Information Contributed from Non-Stationary Spatio-Temporal Data to Be Fused, doi: 10.1109/IGARSS.2008.4778977, vol. 2, pp. II-261 – II-264, Proc. IEEE 2008 IGARRS.	Carolyn Krekeler, Karthik Nagarajan, K. Clint Slatton	Peer Reviewed
2008	Chapter 1 Springs as Ecosystems - - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Knight, R.L. & S.K. Notestein	Other Publications
2008	Chapter 2 Springshed Nutrient Loading, Transport and Transformations - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Cohen, M.J.	Other Publications
2008	Chapter 3 Biogeochemical Processes and Implications for Nutrient Cycling - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Inglett, P.J., K.S. Inglett, K.R. Reddy	Other Publications
2008	Chapter 4 Nutrient Effects on Spring Flora and Fauna - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Jacoby, C.A., T.K. Frazer, E.J. Phlips	Other Publications
2008	Chapter 5 Ecosystem Implications of Invasive Aquatic Plants and Aquatic Plant Control in Florida Springs - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Evans, J.M.	Other Publications
2008	Chapter 6 Effects of Nutrients on Spring Ecosystems - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Knight, R.L. & S.K. Notestein	Other Publications
2008	Chapter 7 Managing Nutrient Inputs to Florida Springs: The Legal Framework - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Hamann, Richard	Other Publications
2008	Chapter 8 Synthesis of Nutrients and Springs: Knowns, Unknowns, Research Priorities and Management Implications - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Brown, Mark T.	Other Publications
2008	Executive Summary and Table of Contents - Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems	Brown, M. T., Reiss, K. C., Cohen, M. J., Evans, J., Reddy, K. R., Inglett, P. W., Inglett, K. S., Frazer, T. K.,Jacoby, C. A., Phlips, E. J., Knight, R. L., Notestein, S. K. and K. A. McKee	Other Publications
2008	Final Report: Summary and Synthesis of the Available Literature on the Effects of Nutrients on Spring Organisms and Systems (whole report PDF)	Brown, M. T., Reiss, K. C., Cohen, M. J., Evans, J., Reddy, K. R., Inglett, P. W., Inglett, K. S., Frazer, T. K.,Jacoby, C. A., Phlips, E. J., Knight, R. L., Notestein, S. K. and K. A. McKee	Final Report
2007	Microbial Enzyme Activity in the Wekiva River	Sharma-Inglett, K., P.W. Inglett, K.R. Reddy	Final Report
2007	Report: Kings Bay Vegetation Evaluation	Jacoby, C.A., T.K. Frazer, R.A. Swett, S.R. Keller, S.K. Notestein	Final Report
2007	Comprehensive Project Report: Hydrogeology for O’Leno State Park and Nitrate Loading from the River Rise, A First Magnitude Spring, DEP Agreement S0182. 2007.	Martin, J.B., and Moore, P.J.	Final Report
2007	Report: Ecological Condition of Algae and Nutrients in Florida Springs: a Synthesis Report.	Stevenson, R.J., A. Pinowska, A. Albertin, J.O. Sickman	Other Publications
2007	Probabilistic Fusion of spatio-temporal data to estimate stream flow via Bayesian belief networks,pp.4870 – 4873, doi: 10.1109/IGARSS.2007.4423952. Proc. IEEE 2007 IGARRS.	K. Nagarajan, C. Krekeler, K. C. Slatton	Peer Reviewed
2007	Implementation of the Model Land Development Code for Florida Springs Protection	Hamann, R., and T. Ruppert	Working Paper
2006	Determining water sources and mixing in the Santa Fe River sink-rise system, north-central Florida, Geological Society of America, Abstracts with Program, v. 38, p. 194. 2006.	Moore, P.J., Martin, J.B., Screaton, E.J., Ritorto, M.	Other Publications
2006	Monitoring well responses to karst conduit head fluctuations: Implications for fluid exchange and matrix transmissivity in the Floridan aquifer, Geological Society of America Special Paper 404	Martin, J. M., Screaton, E. J. and J. B. Martin	Peer Reviewed
2005	Exchange of water between conduit and matrix porosity in eogenetic karst? Evidence from a quantitive dye trace, Geological Society of America, Abstracts with Programs, v. 37, p. 435. 2005.	Moore, P.J., and Martin, J.B.	Other Publications
2004	Conduit properties and karstification in the Santa Fe River Sink-Rise System of the Floridan Aquifer, Ground Water, 42: 338-346. 2004.	Screaton, E., Martin, J.B., Ginn, B., Smith, L.	Peer Reviewed


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